SOFTWARE

Source code (all C++)

Complete gene-finding systems (some require the Gnu Scientific Library, gsl):

• Unveil (HMM-based gene finder; compiles under linux 2.6.18)
• GeneZilla (GHMM-based gene finder; compiles under linux 2.6.18 and Mac OS X 10.4.8)
• HOMER (Higher-Order Markovian Eukaryotic Recognizer) [coming soon]

Libraries useful for constructing gene-finders and related programs:

• HMM library (compiles fine on both linux 2.6.18 and Mac OS X 10.4.8)
• BOOM (Bioinformatics Object-Oriented Modules; linux and Mac versions available)
• BioMaLL (Bioinformatics Machine Learning Library; compiles on linux)
• PhyLib (Phylogenetic modeling Library; compiles on linux 2.6.9)
• Gnu Scientific Library (from the Free Software Foundation)
  

Source code from other authors can be found HERE